Temporal Development of the Culturable, Endophytic Fungal Community in Healthy Grapevine Branches and Occurrence of GTD-Associated Fungi.
Identifieur interne : 000129 ( Main/Exploration ); précédent : 000128; suivant : 000130Temporal Development of the Culturable, Endophytic Fungal Community in Healthy Grapevine Branches and Occurrence of GTD-Associated Fungi.
Auteurs : Christian Kraus [Allemagne] ; Ralf T. Voegele [Allemagne] ; Michael Fischer [Allemagne]Source :
- Microbial ecology [ 1432-184X ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- croissance et développement : Champignons, Endophytes.
- microbiologie : Maladies des plantes, Tiges de plante, Vitis.
- Mycobiome.
English descriptors
- KwdEn :
- MESH :
- growth & development : Endophytes, Fungi.
- microbiology : Plant Diseases, Plant Stems, Vitis.
- Mycobiome.
Abstract
Endophytic fungi play an important role in the life of grapevine, either as beneficial microorganisms or as pathogens. Many surveys concerning the fungal grapevine community have been conducted. Nevertheless, exactly how the fungal community arises within the plant and develops from young shoots to mature vines is still unknown. Therefore, it was the aim of this study to investigate the early development of endophytic fungal communities in healthy grapevine branches from 2 months to 8 years old. More than 3800 fungi belonging to 86 operational taxonomic units (OTUs) were isolated from wood samples and assigned to eight age groups. The community composition within the age groups changed and significant differences between young (≤ 1 year) and old (> 1 year) branches were found. The former were primarily dominated by ubiquitous, fast-growing fungi like Alternaria spp., Aureobasidium pullulans, Cladosporium spp., or Epicoccum nigrum, while communities of perennial branches additionally harbored many grapevine trunk disease (GTD)-associated fungi such as Diplodia seriata or Eutypa lata. This work gives an insight into the early development of fungal communities in grapevine, the nature and composition of primary settlers and core communities, as well as the emergence of GTD-associated fungi in perennial wood. This information may help grapevine growers to better estimate the risk in relation to the applied training system, producing mainly old branches or young shoots.
DOI: 10.1007/s00248-018-1280-3
PubMed: 30397796
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Temporal Development of the Culturable, Endophytic Fungal Community in Healthy Grapevine Branches and Occurrence of GTD-Associated Fungi.</title><author><name sortKey="Kraus, Christian" sort="Kraus, Christian" uniqKey="Kraus C" first="Christian" last="Kraus">Christian Kraus</name><affiliation wicri:level="1"><nlm:affiliation>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen, Germany. christian.kraus@julius-kuehn.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen</wicri:regionArea><wicri:noRegion>76833, Siebeldingen</wicri:noRegion><wicri:noRegion>76833, Siebeldingen</wicri:noRegion><wicri:noRegion>Siebeldingen</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim, Germany. christian.kraus@julius-kuehn.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Stuttgart</region><settlement type="city">Stuttgart</settlement></placeName><orgName type="university">Université de Hohenheim</orgName></affiliation></author><author><name sortKey="Voegele, Ralf T" sort="Voegele, Ralf T" uniqKey="Voegele R" first="Ralf T" last="Voegele">Ralf T. Voegele</name><affiliation wicri:level="4"><nlm:affiliation>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Stuttgart</region><settlement type="city">Stuttgart</settlement></placeName><orgName type="university">Université de Hohenheim</orgName></affiliation></author><author><name sortKey="Fischer, Michael" sort="Fischer, Michael" uniqKey="Fischer M" first="Michael" last="Fischer">Michael Fischer</name><affiliation wicri:level="1"><nlm:affiliation>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen</wicri:regionArea><wicri:noRegion>76833, Siebeldingen</wicri:noRegion><wicri:noRegion>76833, Siebeldingen</wicri:noRegion><wicri:noRegion>Siebeldingen</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:30397796</idno><idno type="pmid">30397796</idno><idno type="doi">10.1007/s00248-018-1280-3</idno><idno type="wicri:Area/Main/Corpus">000221</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000221</idno><idno type="wicri:Area/Main/Curation">000221</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000221</idno><idno type="wicri:Area/Main/Exploration">000221</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Temporal Development of the Culturable, Endophytic Fungal Community in Healthy Grapevine Branches and Occurrence of GTD-Associated Fungi.</title><author><name sortKey="Kraus, Christian" sort="Kraus, Christian" uniqKey="Kraus C" first="Christian" last="Kraus">Christian Kraus</name><affiliation wicri:level="1"><nlm:affiliation>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen, Germany. christian.kraus@julius-kuehn.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen</wicri:regionArea><wicri:noRegion>76833, Siebeldingen</wicri:noRegion><wicri:noRegion>76833, Siebeldingen</wicri:noRegion><wicri:noRegion>Siebeldingen</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim, Germany. christian.kraus@julius-kuehn.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Stuttgart</region><settlement type="city">Stuttgart</settlement></placeName><orgName type="university">Université de Hohenheim</orgName></affiliation></author><author><name sortKey="Voegele, Ralf T" sort="Voegele, Ralf T" uniqKey="Voegele R" first="Ralf T" last="Voegele">Ralf T. Voegele</name><affiliation wicri:level="4"><nlm:affiliation>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Stuttgart</region><settlement type="city">Stuttgart</settlement></placeName><orgName type="university">Université de Hohenheim</orgName></affiliation></author><author><name sortKey="Fischer, Michael" sort="Fischer, Michael" uniqKey="Fischer M" first="Michael" last="Fischer">Michael Fischer</name><affiliation wicri:level="1"><nlm:affiliation>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen</wicri:regionArea><wicri:noRegion>76833, Siebeldingen</wicri:noRegion><wicri:noRegion>76833, Siebeldingen</wicri:noRegion><wicri:noRegion>Siebeldingen</wicri:noRegion></affiliation></author></analytic><series><title level="j">Microbial ecology</title><idno type="eISSN">1432-184X</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Endophytes (growth & development)</term><term>Fungi (growth & development)</term><term>Mycobiome (MeSH)</term><term>Plant Diseases (microbiology)</term><term>Plant Stems (microbiology)</term><term>Vitis (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Champignons (croissance et développement)</term><term>Endophytes (croissance et développement)</term><term>Maladies des plantes (microbiologie)</term><term>Mycobiome (MeSH)</term><term>Tiges de plante (microbiologie)</term><term>Vitis (microbiologie)</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Champignons</term><term>Endophytes</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Endophytes</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Tiges de plante</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Plant Stems</term><term>Vitis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Mycobiome</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Mycobiome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Endophytic fungi play an important role in the life of grapevine, either as beneficial microorganisms or as pathogens. Many surveys concerning the fungal grapevine community have been conducted. Nevertheless, exactly how the fungal community arises within the plant and develops from young shoots to mature vines is still unknown. Therefore, it was the aim of this study to investigate the early development of endophytic fungal communities in healthy grapevine branches from 2 months to 8 years old. More than 3800 fungi belonging to 86 operational taxonomic units (OTUs) were isolated from wood samples and assigned to eight age groups. The community composition within the age groups changed and significant differences between young (≤ 1 year) and old (> 1 year) branches were found. The former were primarily dominated by ubiquitous, fast-growing fungi like Alternaria spp., Aureobasidium pullulans, Cladosporium spp., or Epicoccum nigrum, while communities of perennial branches additionally harbored many grapevine trunk disease (GTD)-associated fungi such as Diplodia seriata or Eutypa lata. This work gives an insight into the early development of fungal communities in grapevine, the nature and composition of primary settlers and core communities, as well as the emergence of GTD-associated fungi in perennial wood. This information may help grapevine growers to better estimate the risk in relation to the applied training system, producing mainly old branches or young shoots.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30397796</PMID><DateCompleted><Year>2019</Year><Month>05</Month><Day>29</Day></DateCompleted><DateRevised><Year>2020</Year><Month>10</Month><Day>12</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-184X</ISSN><JournalIssue CitedMedium="Internet"><Volume>77</Volume><Issue>4</Issue><PubDate><Year>2019</Year><Month>May</Month></PubDate></JournalIssue><Title>Microbial ecology</Title><ISOAbbreviation>Microb Ecol</ISOAbbreviation></Journal><ArticleTitle>Temporal Development of the Culturable, Endophytic Fungal Community in Healthy Grapevine Branches and Occurrence of GTD-Associated Fungi.</ArticleTitle><Pagination><MedlinePgn>866-876</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00248-018-1280-3</ELocationID><Abstract><AbstractText>Endophytic fungi play an important role in the life of grapevine, either as beneficial microorganisms or as pathogens. Many surveys concerning the fungal grapevine community have been conducted. Nevertheless, exactly how the fungal community arises within the plant and develops from young shoots to mature vines is still unknown. Therefore, it was the aim of this study to investigate the early development of endophytic fungal communities in healthy grapevine branches from 2 months to 8 years old. More than 3800 fungi belonging to 86 operational taxonomic units (OTUs) were isolated from wood samples and assigned to eight age groups. The community composition within the age groups changed and significant differences between young (≤ 1 year) and old (> 1 year) branches were found. The former were primarily dominated by ubiquitous, fast-growing fungi like Alternaria spp., Aureobasidium pullulans, Cladosporium spp., or Epicoccum nigrum, while communities of perennial branches additionally harbored many grapevine trunk disease (GTD)-associated fungi such as Diplodia seriata or Eutypa lata. This work gives an insight into the early development of fungal communities in grapevine, the nature and composition of primary settlers and core communities, as well as the emergence of GTD-associated fungi in perennial wood. This information may help grapevine growers to better estimate the risk in relation to the applied training system, producing mainly old branches or young shoots.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kraus</LastName><ForeName>Christian</ForeName><Initials>C</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-3830-8620</Identifier><AffiliationInfo><Affiliation>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen, Germany. christian.kraus@julius-kuehn.de.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim, Germany. christian.kraus@julius-kuehn.de.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Voegele</LastName><ForeName>Ralf T</ForeName><Initials>RT</Initials><AffiliationInfo><Affiliation>Department of Phytopathology, University of Hohenheim, 70599, Hohenheim, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fischer</LastName><ForeName>Michael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Federal Research Centre of Cultivated Plants, Plant Protection in Fruit Crops and Viticulture, Julius Kühn-Institut, 76833, Siebeldingen, Germany.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>FKZ 031A349D</GrantID><Agency>Bundesministerium für Bildung und Forschung</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>11</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Microb Ecol</MedlineTA><NlmUniqueID>7500663</NlmUniqueID><ISSNLinking>0095-3628</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D060026" MajorTopicYN="N">Endophytes</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005658" MajorTopicYN="N">Fungi</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000072761" MajorTopicYN="Y">Mycobiome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D027843" MajorTopicYN="N">Vitis</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Endophytic fungi</Keyword><Keyword MajorTopicYN="N">Fungal community</Keyword><Keyword MajorTopicYN="N">GTD</Keyword><Keyword MajorTopicYN="N">Grapevine wood</Keyword><Keyword MajorTopicYN="N">Training system</Keyword><Keyword MajorTopicYN="N">Vitis vinifera</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>05</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>10</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>11</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>5</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>11</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30397796</ArticleId><ArticleId IdType="doi">10.1007/s00248-018-1280-3</ArticleId><ArticleId IdType="pii">10.1007/s00248-018-1280-3</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li></country><region><li>Bade-Wurtemberg</li><li>District de Stuttgart</li></region><settlement><li>Stuttgart</li></settlement><orgName><li>Université de Hohenheim</li></orgName></list><tree><country name="Allemagne"><noRegion><name sortKey="Kraus, Christian" sort="Kraus, Christian" uniqKey="Kraus C" first="Christian" last="Kraus">Christian Kraus</name></noRegion><name sortKey="Fischer, Michael" sort="Fischer, Michael" uniqKey="Fischer M" first="Michael" last="Fischer">Michael Fischer</name><name sortKey="Kraus, Christian" sort="Kraus, Christian" uniqKey="Kraus C" first="Christian" last="Kraus">Christian Kraus</name><name sortKey="Voegele, Ralf T" sort="Voegele, Ralf T" uniqKey="Voegele R" first="Ralf T" last="Voegele">Ralf T. Voegele</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/GrapevineDiseaseV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000129 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000129 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= GrapevineDiseaseV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:30397796
|texte= Temporal Development of the Culturable, Endophytic Fungal Community in Healthy Grapevine Branches and Occurrence of GTD-Associated Fungi.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:30397796" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GrapevineDiseaseV1
| This area was generated with Dilib version V0.6.37. |  |